I'm attempting to save the result of a GitHub Actions job to be used by another job, like this: jobs: job1: runs-on: ubuntu-latest # Map a step output to a job output outputs: output1: ${{ steps.step1.outputs.test }} steps: - id:…
Helli, I have to build a Docker image for the following bioinformatics tool: https://github.com/CAMI-challenge/CAMISIM. Their dockerfile works but takes a long time to build and I would like to build my own, slightly differently, to learn. I face issues: there…
I have a need to pass a script to a perl script to run in some directories in linux (ubuntu) with bash --version GNU bash, versión 4.4.20(1)-release (x86_64-redhat-linux-gnu) These directories have a problem, and that is that they have extended…
I have a program that takes in a csv file which stores data in this format ` Lastname,Name,YYYYMMDD` (last bit is year month day for birthday) that only accepts **only gregorian calendar years** and I want my program to display…
I have a file that has ~12300000 rows of type <timestamp, reading> - 1674587549.228 29214 1674587549.226 29384 1674587549.226 27813 1674587549.226 28403 1674587549.228 28445 ... 1674587948.998 121 1674587948.998 126 1674587948.999 119 1674587949.000 126 1674587948.996 156 1674587948.997 152 1674587948.998 156 1674588149.225 316…
I have this command which displays all the record from the search. But I would like to filter only the record that matches the search word. For e.g. for user in $(aws iam list-users |grep -i UserName|sed -e 's/.*: "//'…
I want to remove the extension of specific files with a given extension. So for instance, in a directory foobar, we have foo.txt, bar.txt foobar.jpg. Additionally, the extension that I've put in to be removed is txt After calling the…
So I try to run docker-compose on Fedora 36 but any time I try it, it says this: Traceback (most recent call last): File "/usr/bin/docker-compose", line 33, in <module> sys.exit(load_entry_point('docker-compose==1.29.2', 'console_scripts', 'docker-compose')()) File "/usr/bin/docker-compose", line 25, in importlib_load_entry_point return next(matches).load()…
I have one file which has list of IDs, index/header, let's call it list.txt TRINITY_DN10002_c0_g1_i1.p1 TRINITY_DN10002_c0_g1_i2.p1 TRINITY_DN10002_c1_g1_i1.p1 TRINITY_DN10006_c0_g1_i1.p1 TRINITY_DN10006_c0_g1_i4.p1 TRINITY_DN10007_c0_g1_i2.p1 TRINITY_DN1000_c0_g1_i15.p1 TRINITY_DN1000_c0_g1_i31.p1 TRINITY_DN1000_c0_g1_i40.p2 TRINITY_DN1000_c0_g2_i1.p1 TRINITY_DN10012_c2_g1_i1.p1 TRINITY_DN10014_c0_g2_i1.p1 TRINITY_DN10014_c2_g1_i1.p1 TRINITY_DN10014_c2_g2_i1.p1 and another file (large) which has the data/information (sequences) I want to…
Self answers:How to stop all tasks on a cluster with a single cli command, easily allowing for extra parameters to be passed.