I have a bash script that applies different transformation/mappings on columns of TSV file. I am trying to parallelize the transformations using GNU parallel, however my code hangs. For simplicity consider cat, the identity mapper (i.e. input -> output), and…
I get the contents of a text file into an array and then sequentially get the elements of the array and try to add the elements to the json: #!/bin/bash JSON=$(jq -n '') readarray -t array < ./station.sample count=0 for…
I have a bash script that I want to dockerize but I'm having issues with both the ENTRYPOINT and CMD directives. Here's my Dockerfile: FROM ubuntu:22.04 # NOTE: these can be overridden with `--build-arg KEY=VALUE` ARG ... WORKDIR /scripts COPY…
I'm trying to use VSCode cli code in a while loop in a Bash script to open a number of files, the names of which I'm reading from a text file. When I run the code below, it opens a…
Given the --data parameter of a curl statement: --data '{ "collection": [ "Library" ], "filter": "{'''target.endpointUID''':{'''$eq''': '''ABC123'''}}", "skip": 0, "limit": 16 }' I'd like to replace ABC123 with the variable I want to use but I cannot figure out the…
I am using cURL inside bash to fetch json data from remote API. Also using jq to parse and loop through the json array to perform additional operations. The response looks like this: [ { "services": [ "HOM" ], "specialServiceId":…
I have an UBUNTU installation USB disk. The disk name is "UBUNTU 22_0" and will be mounted on "/run/media/UBUNTU 22_0-sda1". There is a space on it so the command "df | grep /dev/sda | awk '{ print $6 }'" is…
I create the image "FOO" from a Dockerfile that contains an ENTRYPOINT. Is it possible to run this image in order that the entry point is executed (no override), and then the extra commands from the command line ? Let's…
I would like to read the href url that is stored next to the <td>blue</td> element: <html> <body> <table> <tr> <td> <a href="localhost/url1">url1</a> </td> <td>blue</td> </tr> <tr> <td> <a href="localhost/url2">url2</a> </td> <td>green</td> </tr> </table> </body> </html> I first tried to…
I'm working in a project that requires the use 4 software's. 1 call PRIME that use MixMHCpred and the other 3 netMHCpan, nectchop and netMCHstab. I run the terminal command for each of then (I'm working in Linux) and the…