Linux Function App in Azure portal won't start because it keeps looking for a directory in /home/site/wwwroot/

I tried deploying .Net 6.0 Isolated Function with Function App via ARM template in Azure DevOps and it ran successfully, Refer below:-

My ARM template code using source control parameter referred to my github Function code repository:-

functionapp.json

You can try this ARM Template for testing.

Below ARM template reference from my SO thread answer Refer my answer for more clarity on deploying Function app and Trigger with ARM template.

{
    "$schema": "https://schema.management.azure.com/schemas/2019-04-01/deploymentTemplate.json#",
    "contentVersion": "1.0.0.0",
    "parameters": {
        "appName": {
            "defaultValue": "[concat('funtionapp-', uniqueString(resourceGroup().id))]",
            "type": "string",
            "metadata": {
                "description": "The name of the function app that you wish to create."
            }
        },
        "sku": {
            "defaultValue": "S1",
            "type": "string",
            "metadata": {
                "description": "The pricing tier for the hosting plan."
            }
        },
        "workerSize": {
            "defaultValue": "0",
            "allowedValues": [
                "0",
                "1",
                "2"
            ],
            "type": "String",
            "metadata": {
                "description": "The instance size of the hosting plan (small, medium, or large)."
            }
        },
        "storageAccountType": {
            "defaultValue": "Standard_LRS",
            "allowedValues": [
                "Standard_LRS",
                "Standard_GRS",
                "Standard_ZRS",
                "Premium_LRS"
            ],
            "type": "string",
            "metadata": {
                "description": "Storage Account type"
            }
        },
        "repoURL": {
            "defaultValue": "https://github.com/sid24desai/FunctionApp49",
            "type": "string",
            "metadata": {
                "description": "The URL for the GitHub repository that contains the project to deploy."
            }
        },
        "branch": {
            "defaultValue": "master",
            "type": "string",
            "metadata": {
                "description": "The branch of the GitHub repository to use."
            }
        },
        "location": {
            "defaultValue": "[resourceGroup().location]",
            "type": "string",
            "metadata": {
                "description": "Location for all resources."
            }
        }
    },
    "variables": {
        "functionAppName": "[parameters('appName')]",
        "hostingPlanName": "[concat(parameters('appName'), '-plan')]",
        "storageAccountName": "[concat(uniquestring(resourceGroup().id), 'functions')]"
    },
    "resources": [
        {
            "type": "Microsoft.Storage/storageAccounts",
            "apiVersion": "2021-02-01",
            "name": "[variables('storageAccountName')]",
            "location": "[parameters('location')]",
            "sku": {
                "name": "[parameters('storageAccountType')]"
            },
            "kind": "Storage"
        },
        {
            "type": "Microsoft.Web/serverfarms",
            "apiVersion": "2020-12-01",
            "name": "[variables('hostingPlanName')]",
            "location": "[parameters('location')]",
            "sku": {
                "name": "[parameters('sku')]"
            },
            "properties": {
                "workerSize": "[parameters('workerSize')]",
                "numberOfWorkers": 1
            }
        },
        {
            "type": "Microsoft.Web/sites",
            "apiVersion": "2020-12-01",
            "name": "[variables('functionAppName')]",
            "location": "[parameters('location')]",
            "dependsOn": [
                "[resourceId('Microsoft.Web/serverfarms', variables('hostingPlanName'))]",
                "[resourceId('Microsoft.Storage/storageAccounts', variables('storageAccountName'))]"
            ],
            "kind": "functionapp",
            "properties": {
                "name": "[variables('functionAppName')]",
                "serverFarmId": "[resourceId('Microsoft.Web/serverfarms', variables('hostingPlanName'))]",
                "clientAffinityEnabled": false,
                "siteConfig": {
                    "alwaysOn": true,
                    "cors": {
                        "allowedOrigins": [
                            "*"
                        ]
                    },
                    "appSettings": [
                        {
                            "name": "FUNCTIONS_EXTENSION_VERSION",
                            "value": "~v4"
                        },
                        {
                            "name": "AzureWebJobsStorage",
                            "value": "[concat('DefaultEndpointsProtocol=https;AccountName=',variables('storageAccountName'),';AccountKey=',listkeys(resourceId('Microsoft.Storage/storageAccounts', variables('storageAccountName')), '2019-06-01').keys[0].value,';')]"
                        },
                        {
                            "name": "AzureWebJobsDashboard",
                            "value": "[concat('DefaultEndpointsProtocol=https;AccountName=',variables('storageAccountName'),';AccountKey=',listkeys(resourceId('Microsoft.Storage/storageAccounts', variables('storageAccountName')), '2019-06-01').keys[0].value,';')]"
                        }
                    ]
                }
            },
            "resources": [
                {
                    "type": "sourcecontrols",
                    "apiVersion": "2020-12-01",
                    "name": "web",
                    "dependsOn": [
                        "[resourceId('Microsoft.Web/Sites', variables('functionAppName'))]"
                    ],
                    "properties": {
                        "RepoUrl": "[parameters('repoURL')]",
                        "branch": "[parameters('branch')]",
                        "IsManualIntegration": true
                    }
                }
            ]
        }
    ]
}

My Azure Devops repository:-

My Build yaml pipeline:-

trigger:
- main

pool:
  vmImage: ubuntu-latest

steps:
- task: AzureResourceManagerTemplateDeployment@3
  displayName: 'ARM Template deployment: Resource Group scope'
  inputs:
    deploymentScope: 'Resource Group'
    azureResourceManagerConnection: 'xxx subscription(xxxxd6-b4fd-e2xxxx)'
    subscriptionId: 'xxxxxxxxx2a7'
    action: 'Create Or Update Resource Group'
    resourceGroupName: 'valleyrg103'
    location: 'Australia East'
    templateLocation: 'Linked artifact'
    csmFile: '$(System.DefaultWorkingDirectory)/functionapp.json'
    deploymentMode: 'Incremental'

Output:-

Make sure you add this https://portal.azure.com in the CORS setting like below:-

Function app with .net 6.0 Isolated Function got deployed and is running successfully refer below:-

Same Deployment with Release pipeline using ARM Template deployment: Resource Group scope task :-

Output:-