Ubuntu Question posted in
The official Ubuntu documentation can be found here.

Ubuntu – How to setup CMake project to use PyTorch C++ API installed via Conda

I have Miniconda3 on a Linux system (Ubuntu 22.04). The environment has Python 3.10 as well as a functioning (in Python) installation of PyTorch (installed following official instructions).

I would like to setup a CMake project that uses PyTorch C++ API. The reason is not important and also I am aware that it’s beta (the official documentation states that), so instability and major changes are not excluded.

Currently I have this very minimal CMakeLists.txt:

cmake_minimum_required(VERSION 3.19) # or whatever version you use
project(PyTorch_Cpp_HelloWorld CXX)

set(PYTORCH_ROOT "/home/$ENV{USER}/miniconda/envs/ML/lib/python3.10/site-packages/torch")
list(APPEND CMAKE_PREFIX_PATH "${PYTORCH_ROOT}/share/cmake/Torch/")
find_package(Torch REQUIRED CONFIG)

...
# Add executable
# Link against PyTorch library

When I try to configure the project I’m getting error:

CMake Error at CMakeLists.txt:21 (message): message called with
incorrect number of arguments

— Could NOT find Protobuf (missing: Protobuf_LIBRARIES Protobuf_INCLUDE_DIR)
— Found Threads: TRUE CMake Warning at /home/USER/miniconda/envs/ML/lib/python3.10/site-packages/torch/share/cmake/Caffe2/public/protobuf.cmake:88
(message): Protobuf cannot be found. Depending on whether you are
building Caffe2 or a Caffe2 dependent library, the next warning /
error will give you more info. Call Stack (most recent call first):
/home/USER/miniconda/envs/ML/lib/python3.10/site-packages/torch/share/cmake/Caffe2/Caffe2Config.cmake:56
(include)
/home/USER/miniconda/envs/ML/lib/python3.10/site-packages/torch/share/cmake/Torch/TorchConfig.cmake:68
(find_package) CMakeLists.txt:23 (find_package)

CMake Error at
/home/USER/miniconda/envs/ML/lib/python3.10/site-packages/torch/share/cmake/Caffe2/Caffe2Config.cmake:58
(message): Your installed Caffe2 version uses protobuf but the
protobuf library cannot be found. Did you accidentally remove it,
or have you set the right CMAKE_PREFIX_PATH? If you do not have
protobuf, you will need to install protobuf and set the library path
accordingly. Call Stack (most recent call first):
/home/USER/miniconda/envs/ML/lib/python3.10/site-packages/torch/share/cmake/Torch/TorchConfig.cmake:68
(find_package) CMakeLists.txt:23 (find_package)

I installed libprotobuf (again via conda) but, while I can find the library files, I can’t find any *ProtobufConfig.cmake or anything remotely related to protobuf and its CMake setup.

Before I go fight against wind mills I would like to ask here what the proper setup would be. I am guessing building from source is always an option, however this will pose a huge overhead on people, who I collaborate with.

Tags:

2

Answers


  1. 0

    As an alternative to using conda, I would suggest to just grab the pre-built library using the link https://download.pytorch.org/libtorch/nightly/cpu/libtorch-shared-with-deps-latest.zip Unzipping that will give you a folder libtorch which you can put next to your CMakeLists.txt. With that, all you need to have in your cmake (see here) would be something like this:

    project(example-app)

find_package(Torch REQUIRED)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${TORCH_CXX_FLAGS}")

add_executable(example-app example-app.cpp)
target_link_libraries(example-app "${TORCH_LIBRARIES}")
set_property(TARGET example-app PROPERTY CXX_STANDARD 14)

list(APPEND CMAKE_PREFIX_PATH "libtorch")
    Login or Signup to reply.
  2. 0

    Using this conda env:

    name: pytorch_latest
channels:
  - pytorch
  - conda-forge
  - defaults
dependencies:
  - pytorch=1.11.0
  - torchvision
  - torchaudio
  - cpuonly

    I copied the small example from here and got it to run. The key was to set the correct library directories (both torch in site-packages, but also the lib folder of the environment). The cmake file is written so that the folders are automatically found :

    example-app.cpp

    #include <torch/torch.h>
#include <iostream>

int main() {
  torch::Tensor tensor = torch::rand({2, 3});
  std::cout << tensor << std::endl;
}

    CMakeLists.txt:

    cmake_minimum_required(VERSION 3.0 FATAL_ERROR)
project(example-app)

#Add the torch library directory
list(APPEND CMAKE_PREFIX_PATH "$ENV{CONDA_PREFIX}/lib/python3.10/site-packages/torch")

#This is needed to be able to find the mkl and other dependent libraries
link_directories("$ENV{CONDA_PREFIX}/lib")
set(ENV{MKLROOT} "$ENV{CONDA_PREFIX}/lib")
find_package(Torch REQUIRED)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${TORCH_CXX_FLAGS}")

add_executable(example-app example-app.cpp)

#We need to add pthread and omp manually here
target_link_libraries(example-app "${TORCH_LIBRARIES}" pthread omp)

set_property(TARGET example-app PROPERTY CXX_STANDARD 14)

    Exact environment (in case there are problems with reproducibility):

    name: pytorch_latest
channels:
  - pytorch
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_kmp_llvm
  - blas=2.115=mkl
  - blas-devel=3.9.0=15_linux64_mkl
  - brotlipy=0.7.0=py310h5764c6d_1004
  - bzip2=1.0.8=h7f98852_4
  - ca-certificates=2022.5.18.1=ha878542_0
  - certifi=2022.5.18.1=py310hff52083_0
  - cffi=1.15.0=py310h0fdd8cc_0
  - charset-normalizer=2.0.12=pyhd8ed1ab_0
  - cpuonly=2.0=0
  - cryptography=37.0.1=py310h9ce1e76_0
  - ffmpeg=4.3=hf484d3e_0
  - freetype=2.10.4=h0708190_1
  - giflib=5.2.1=h36c2ea0_2
  - gmp=6.2.1=h58526e2_0
  - gnutls=3.6.13=h85f3911_1
  - idna=3.3=pyhd8ed1ab_0
  - jpeg=9e=h166bdaf_1
  - lame=3.100=h7f98852_1001
  - lcms2=2.12=hddcbb42_0
  - ld_impl_linux-64=2.36.1=hea4e1c9_2
  - lerc=3.0=h9c3ff4c_0
  - libblas=3.9.0=15_linux64_mkl
  - libcblas=3.9.0=15_linux64_mkl
  - libdeflate=1.10=h7f98852_0
  - libffi=3.4.2=h7f98852_5
  - libgcc-ng=12.1.0=h8d9b700_16
  - libgfortran-ng=12.1.0=h69a702a_16
  - libgfortran5=12.1.0=hdcd56e2_16
  - libiconv=1.17=h166bdaf_0
  - liblapack=3.9.0=15_linux64_mkl
  - liblapacke=3.9.0=15_linux64_mkl
  - libnsl=2.0.0=h7f98852_0
  - libpng=1.6.37=h21135ba_2
  - libstdcxx-ng=12.1.0=ha89aaad_16
  - libtiff=4.4.0=h0fcbabc_0
  - libuuid=2.32.1=h7f98852_1000
  - libuv=1.43.0=h7f98852_0
  - libwebp=1.2.2=h3452ae3_0
  - libwebp-base=1.2.2=h7f98852_1
  - libxcb=1.13=h7f98852_1004
  - libzlib=1.2.12=h166bdaf_0
  - llvm-openmp=14.0.4=he0ac6c6_0
  - lz4-c=1.9.3=h9c3ff4c_1
  - mkl=2022.1.0=h84fe81f_915
  - mkl-devel=2022.1.0=ha770c72_916
  - mkl-include=2022.1.0=h84fe81f_915
  - ncurses=6.3=h27087fc_1
  - nettle=3.6=he412f7d_0
  - numpy=1.22.4=py310h4ef5377_0
  - openh264=2.1.1=h780b84a_0
  - openjpeg=2.4.0=hb52868f_1
  - openssl=3.0.3=h166bdaf_0
  - pillow=9.1.1=py310he619898_1
  - pip=22.1.2=pyhd8ed1ab_0
  - pthread-stubs=0.4=h36c2ea0_1001
  - pycparser=2.21=pyhd8ed1ab_0
  - pyopenssl=22.0.0=pyhd8ed1ab_0
  - pysocks=1.7.1=py310hff52083_5
  - python=3.10.4=h2660328_0_cpython
  - python_abi=3.10=2_cp310
  - pytorch=1.11.0=py3.10_cpu_0
  - pytorch-mutex=1.0=cpu
  - readline=8.1=h46c0cb4_0
  - requests=2.27.1=pyhd8ed1ab_0
  - setuptools=62.3.2=py310hff52083_0
  - sqlite=3.38.5=h4ff8645_0
  - tbb=2021.5.0=h924138e_1
  - tk=8.6.12=h27826a3_0
  - torchaudio=0.11.0=py310_cpu
  - torchvision=0.12.0=py310_cpu
  - typing_extensions=4.2.0=pyha770c72_1
  - tzdata=2022a=h191b570_0
  - urllib3=1.26.9=pyhd8ed1ab_0
  - wheel=0.37.1=pyhd8ed1ab_0
  - xorg-libxau=1.0.9=h7f98852_0
  - xorg-libxdmcp=1.1.3=h7f98852_0
  - xz=5.2.5=h516909a_1
  - zlib=1.2.12=h166bdaf_0
  - zstd=1.5.2=h8a70e8d_1
    Login or Signup to reply.
Please signup or login to give your own answer.

Back To Top
Search