Ubuntu – Why does pdoc in pre-commit pass locally, but fail with "files were modified by this hook" in GitHub action?

Pdoc is invoked last in my pre-commit hook, it builds documentation to /docs, which is included in my repository. Files in /docs are excluded from the pre-commit hook, so the formatting hooks don’t touch them.

I observe the following pattern:

1. I run the pre-commit locally using pre-commit run --all. The hook passes.
2. I push my commit to the corresponding GitHub repository, where an action is triggered that runs the pre-commit automatically. The hook fails with the message that "files were modified by this hook".

My .pre-commit-config.yaml looks like this:

exclude: "docs/"
repos:
  - repo: local
    hooks:
    -   id: pdoc
        name: pdoc
        description: 'pdoc: Auto-generate API documentation for Python projects'
        entry: pdoc -o ./docs -t ./misc/pdoc-template ./my_pkg
        language: python
        language_version: python3
        require_serial: true
        types: [python]

My .github/workflows/pre-commit.yml that defines the GitHub action looks like this:

name: pre-commit

on:
  push:
    branches: [main, develop]
  pull_request:
    branches: [main, develop]

jobs:
  pre-commit:
    runs-on: ubuntu-latest
    timeout-minutes: 10

    steps:
      - name: Check out repository
        uses: actions/checkout@v3

      - name: Set up Python
        uses: actions/setup-python@v3
        with:
          python-version: "3.10"

      - name: Install my pkg
        run: |
          pip install .[dev]
          pip list

      - name: Run pre-commit
        run: pre-commit run -a

Using Pdoc’s --show-diff-on-failure option in the GitHub action suggests that search.js has different content. This is the full diff:

2022-06-19T15:22:18.3695089Z All changes made by hooks:
2022-06-19T15:22:18.3723729Z diff --git a/docs/search.js b/docs/search.js
2022-06-19T15:22:18.3724366Z index 0bbe6a8..82690ba 100644
2022-06-19T15:22:18.3725479Z --- a/docs/search.js
2022-06-19T15:22:18.3725832Z +++ b/docs/search.js
2022-06-19T15:22:18.3726181Z @@ -1,6 +1,6 @@
2022-06-19T15:22:18.3726460Z  window.pdocSearch = (function(){
2022-06-19T15:22:18.3823408Z  /** elasticlunr - http://weixsong.github.io * Copyright (C) 2017 Oliver Nightingale * Copyright (C) 2017 Wei Song * MIT Licensed */!function(){function e(e){if(null===e||"object"!=typeof e)return e;var t=e.constructor();for(var n in e)e.hasOwnProperty(n)&&(t[n]=e[n]);return t}var t=function(e){var n=new t.Index;return n.pipeline.add(t.trimmer,t.stopWordFilter,t.stemmer),e&&e.call(n,n),n};t.version="0.9.5",lunr=t,t.utils={},t.utils.warn=function(e){return function(t){e.console&&console.warn&&console.warn(t)}}(this),t.utils.toString=function(e){return void 0===e||null===e?"":e.toString()},t.EventEmitter=function(){this.events={}},t.EventEmitter.prototype.addListener=function(){var e=Array.prototype.slice.call(arguments),t=e.pop(),n=e;if("function"!=typeof t)throw new TypeError("last argument must be a function");n.forEach(function(e){this.hasHandler(e)||(this.events[e]=[]),this.events[e].push(t)},this)},t.EventEmitter.prototype.removeListener=function(e,t){if(this.hasHandler(e)){var n=this.events[e].indexOf(t);-1!==n&&(this.events[e].splice(n,1),0==this.events[e].length&&delete this.events[e])}},t.EventEmitter.prototype.emit=function(e){if(this.hasHandler(e)){var t=Array.prototype.slice.call(arguments,1);this.events[e].forEach(function(e){e.apply(void 0,t)},this)}},t.EventEmitter.prototype.hasHandler=function(e){return e in this.events},t.tokenizer=function(e){if(!arguments.length||null===e||void 0===e)return[];if(Array.isArray(e)){var n=e.filter(function(e){return null===e||void 0===e?!1:!0});n=n.map(function(e){return t.utils.toString(e).toLowerCase()});var i=[];return n.forEach(function(e){var n=e.split(t.tokenizer.seperator);i=i.concat(n)},this),i}return e.toString().trim().toLowerCase().split(t.tokenizer.seperator)},t.tokenizer.defaultSeperator=/[s-]+/,t.tokenizer.seperator=t.tokenizer.defaultSeperator,t.tokenizer.setSeperator=function(e){null!==e&&void 0!==e&&"object"==typeof e&&(t.tokenizer.seperator=e)},t.tokenizer.resetSeperator=function(){t.tokenizer.seperator=t.tokenizer.defaultSeperator},t.tokenizer.getSeperator=function(){return t.tokenizer.seperator},t.Pipeline=function(){this._queue=[]},t.Pipeline.registeredFunctions={},t.Pipeline.registerFunction=function(e,n){n in t.Pipeline.registeredFunctions&&t.utils.warn("Overwriting existing registered function: "+n),e.label=n,t.Pipeline.registeredFunctions[n]=e},t.Pipeline.getRegisteredFunction=function(e){return e in t.Pipeline.registeredFunctions!=!0?null:t.Pipeline.registeredFunctions[e]},t.Pipeline.warnIfFunctionNotRegistered=function(e){var n=e.label&&e.label in this.registeredFunctions;n||t.utils.warn("Function is not registered with pipeline. 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I use Pdoc v12.0.2 both locally and on GitHub, and nothing about my package’s source code is different between the local and GitHub versions.